What is the most elegant way of selecting a subset of columns using pytables?
I have a dataset with 300+ columns in pytables, and I want to be able to choose different subsets easily. There doesn't seem to be a very elegant solution to this, or is there something I'm missing?
I would also be happy with a way to create another table that is simply aliasing select columns from the original table, so that I could have my main table and then my subset teables. 开发者_运维问答Is there a way to do that?
Would something like this work?
from numpy import array, dtype
from h5py import File
from operator import itemgetter
# Dummy data
d = dtype([('a', int),('b', int),('c', int)])
a = array([(1, 6, 4), (5, 7, 1), (9, 7, 8), (3, 1, 2), (2, 1, 6)],dtype=d)
hdf = File('tmp.hdf','a')
hdf.create_dataset('data',data=a)
hdf.flush()
# Extract data
dat = hdf.get('data',default=0)
sub = ['a','c']
get = itemgetter(*sub)
print get(dat)
gives,
(array([1, 5, 9, 3, 2]), array([4, 1, 8, 2, 6]))
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