I\'m having a little coding issue in a bioinformatics project I\'m working on. Basically, my task is to extract motif sequences from a database and use the information to annotate a sequence alignment
I am trying to parse a GFF file using the BCBio GFF parser and I get the following error. Can anybody help me in resolving this problem?
I try to score the already-aligned sequences. Let say seq1 = \'PAVKDLGAEG-ASDKGT--SHVVY----------TI-QLASTFE\'
Greetings to the stackoverflow community, I am currently following a bioinformatics module as part of a biomedical degree (I am basically a python newbie) and the following task is required as part o
When I try, from Bio.Alphabet impor开发者_Go百科t IUPAC from Bio import Seq my_prot = Seq(\"AGTACACTGGT\", IUPAC.protein)
I\'ve created a script that by default creates one multiprocessing Process; then it works fine. When starting multiple processes, it starts to hang, and not always in the same place. The program\'s ab
I trying to build a tree with BioPython, Phylo module. What I\'ve done so far is this image: each name has a four digit number followed by - and a number: this number refer to the number of times th
How can I fetch genomic sequence efficiently using Python?For example, from a .fa file or some other easily obtained format?I basically want an interface fe开发者_Python百科tch_seq(chrom, strand, star
I have a multiple sequence alignment (Clustal) file and I want to read this file and arrange sequences in such a way that it looks more clear and precise in order.
I am trying to generate tree with fasta file input and Alignment with MuscleCommandline import sys,os, subprocess
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