How can I fetch genomic sequence efficiently using Python?For example, from a .fa file or some other easily obtained format?I basically want an interface fe开发者_Python百科tch_seq(chrom, strand, star
I\'ve written a bookmarlet to open a user defined web link, in this specific case a specific genomic location in the UCSC genome broswer.
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I have a scientific data management problem which seems general, but I can\'t find an existing solution or even a description of it, which I have long puzzled over.I am about to embark on a major rewr
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I\'m storing contacts between different elements. I want to eliminate elements of certain type and store new contacts of elements which were interconnected by the eliminated element.
开发者_开发问答How can I extract DNA sequence using a Perl script from genome browser (UCSC), if I have their coordinates?You can pipe a DAS sequence request into a Perl script that parses out the XML
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I\'m trying to do a simple genomic track intersection in R, and running into major performance problems, probably related to my use of for loops.
I am trying to implement protein pairwise sequence alignment using \"Global Alignment\" algorithm by \'Needleman -Wunsch\'.
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