In Matlab, I want to make a seqlogo plot o开发者_开发问答f an amino acid sequence profile. But instead of scaling the heights of the plot columns by entropy, I want all the columns to be the same heig
(Note: this question was cross-posted on Biostar) Hi all, I\'m trying to send a RPC-encoded SOAP query to Reactome (a biological pathways database),using curl:
I am able to search a motif in a multi fasta file and print the line containing the motif.... but i need to print all the sequences along with the header line of the motif containing fasta sequence. P
From two seque开发者_StackOverflow社区nces given I need to check for every three codons and if the changes are same as in the following list, then I have to check out the location of changes and the c
I search a method in BioJava to get the Atom sequence from a PDB file. I watched the BioJava API but for the getAtomSequence() 开发者_StackOverflow社区it catches the amino acids.
The description of the problem I am having is a bit complicated, and I will err on the side of providing more complete information. For the impatient, here is the briefest way I can summarize it:
I was trying to make a volcano plot with some real data, using log2(ratio) vs. Z-value significance. However the scatter of the points is too less contrary to \'normal\' volcano plots and I\'m getting
I\'m writing a biological evolution simulator.Currently, all of my code is written in Python.For the most part, this is great and everything works sufficiently well.However, there are two steps in the
Say I have a file of chromosomal data I\'m processing with Ruby, #Base_IDSegment_IDRead_Depth 1100 2800 3seg11900
I am a beginner Silverlight programmer preparing for the inte开发者_运维知识库rview in medical research company. Job sounds damn interesting and I would like to get there.
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