How to evaluate this scheme in RWeka?
The scheme I am trying to evaluate is:
weka.classifiers.meta.AttributeSelectedClassifier -E "weka.attributeSelection.CfsSubsetEval " -S "weka.attributeSelection.BestFirst -D 1 -N 5" -W weka.classifiers.functions.SMOreg -- -C 1.0 -N 0 -I "weka.classifiers.functions.supportVector.RegSMOImproved -L 0.0010 -W 1 -P 1.0E-12 -T 0.0010 -V" -K "weka.classifiers.functions.supportVector.PolyKernel -C 250007 -E 1.0"
i.e. I am trying to run an AttributeSelectedClassifier with an SMOreg classifier inside. Every other parameter is the default value of the respective classifier.
So the R code is:
optns <- Weka_control(W = "weka.classifiers.functions.SMOreg")
ASC <- make_Weka_classifier("weka/classifiers/meta/AttributeSelectedClassifier")
model <- ASC(class ~ ., data = as.data.frame(dat), control = optns)
evaluation <- evaluate_Weka_classifier(model, numFolds = 10)
evaluation
When I run the above R code I get this error:
Error in .jcall(evaluation, "D", x, ...) : java.lang.NullPointerException
The above error happens in RWeka's evaluate.R where it tries to call the WEKA methods: "pctCorrect", "pctIncorrect", "pctUnclassified", "kappa", "meanAbsoluteError","rootMeanSquaredError","relativeAbsoluteError","rootRelativeSquaredError"
I also tried manually specifying the default values using the Weka_control object like so:
optns <- Weka_control(E = "weka.attributeSelection.CfsSubsetEval ",
S = list("weka.attributeSelection.BestFirst", D = 1,N = 5),
W = list("weka.classifiers.functions.SMOreg", "--",
C=1.0, N=0,
I = list("weka.classifiers.functions.supportVector.RegSMOImproved",
L = 0.0010, W=1,P=1.0E-12,T=0.0010,V=TRUE),
K = list("weka.classifiers.functions.supportVector.PolyKernel",
C=250007, E=1.0)))
ASC <- make_Weka_classifier("weka/classifiers/meta/AttributeSelectedClassifier") 开发者_StackOverflow
model <- ASC(class ~ ., data = as.data.frame(dat), control = optns)
evaluation <- evaluate_Weka_classifier(model, numFolds = 10)
evaluation
and I get this error:
Error in .jcall(classifier, "V", "buildClassifier", instances) :
java.lang.Exception: Can't find class called: weka.classifiers.functions.SMOreg -- -C 1 -N 0 -I weka.classifiers.functions.supportVector.RegSMOImproved -L 0.001 -W 1 -P 1e-12 -T 0.001 -V -K weka.classifiers.functions.supportVector.PolyKernel -C 250007 -E 1
I tried your example but got a different error (where dat is my own data frame)
Error in model.frame.default(formula = class ~ ., data = dat) :
object is not a matrix
Your error may be not directly related to syntax of calling this Weka function but some issues with path setup.
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