How do I generate a listing of article names and e-mail addresses from pubmed results?
I want to generate a listing of (1) article titles and (2) article author e-mail addresses all from pubmed search results. Using the pubmed EFetch ultility (see this link for details: http://www.ncbi.nlm.nih.gov/corehtml/query/static/efetchlit_help.html) I have successfully created a php script to retrieve this data in an xml format as follows...
<?php
$query = '"genetics"[MeSH] AND "Nature"[TA]';
$params = array(
'db' => 'pubmed',
'retmode' => 'xml',
'retmax' => 1,
'usehistory' => 'y',
'term' => $query,
);
$xml = simplexml_load_file('http://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?' . http_build_query($params));
$params = array(
'db' => 'pubmed开发者_运维知识库',
'retmode' => 'xml',
'query_key' => (string) $xml->QueryKey,
'WebEnv' => (string) $xml->WebEnv,
'rettype' => 'full',
'retmax' => 10,
);
$xml = simplexml_load_file('http://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?' . http_build_query($params));
print_r ($xml);
?>
However, I am having trouble resolving two issues.
(1) E-mail addresses do not have their own xml field, as you can see if you review the output generated by my example. Therefore, how do I extract those addresses from the xml?
(2) Once that is accomplished, how do I create an html listing of article titles, followed beneath it by the associated e-mail address?
Thank you in advance for your help!
I ran your script, and I don't see a single email address in the output.
Either way, the easiest way to accomplish what you're trying is to get the XML, and then apply a very simple XSL transformation (XSLT) against the XML that's returned.
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