R Heat Map , Labels on Y axis coming out to be very close
I am using R to plot the heat map of a data in CSV file (10 (Columns) Conditions and 1000 (Rowa))
Following is the Code I am using ..
nba <- read.csv("1317754115.csv", sep=",")
nba_matrix <- data.matrix(nba)
cexRow = 0.2 + 1/log10(1000开发者_开发问答),
cexCol = 0.2 + 1/log10(10),
nba_heatmap <- heatmap(nba_matrix, Rowv=cexRow, Colv=cexCol,
col = heat.colors(256), scale="column", margins=c(5,10))
Heat Map Image
Now Rows on right hand sides are very close so I can not read the label names ,
Can some one please tell me how can i show all labels on Y-Axis
Thanks
You can't change the aspect ratio with the base heatmap
function. To get this functionality, see heatmap.2
in the gplots
package, or aspectHeatmap
in the ClassDiscovery
package. Here's an example:
require(gplots)
nrow = 100
ncol = 10
set.seed(12345)
row.names = replicate(nrow, paste(letters[sample(10)], collapse=''))
col.names = replicate(ncol, paste(letters[sample(10)], collapse=''))
values = matrix(runif(nrow*ncol), nrow=nrow, dimnames=list(row.names, col.names))
dev.new(width=5, height=10)
heatmap(values)
dev.new(width=5, height=10)
heatmap.2(values)
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