Installing knncat
I am using R in Ubuntu 10.04.
I need to understand the documentation. Installing knncat I get this error message:
gcc -I/usr/share/R/include -I . -DUSE_R_ALLOC -DCALL_FROM_R -fpic
-std=gnu99 -O3 -pipe -g -c ranlib.c -o ranlib.o gcc -I/usr/share/R/include -I . -DUSE_R_ALLOC -DCALL_FROM_R -fpic -std=gnu99 -O3 -pipe -g -c utilsR.c -o utilsR.o gcc -shared -o knncat.so com.o dodisc.o donn.o donnwrap.o dsort.o linpack.o matrix.o
objective.o ords.o ranlib.o utilsR.o -llapack -lblas -lgfortran -lm
-L/usr/lib/R/lib -lR /usr/bin/ld: cannot find -llapack collect2: ld returned 1 exit status make: *** [knncat.so] Error 1 ERROR:
compilation failed for package ‘knncat’
In the documentation I find this recomendation:
Provision is made for using an external LAPACK library, principally to
cope with BLAS libraries which contain a copy of LAPACK (such as s开发者_StackOverflow社区unperf
on Solaris, vecLib on OS X and ACML on ‘ix86’/‘x86_64’ Linux)
If it is mandatory (?), I should use this code:
--with-lapack="-L/path/to/libs -llapack -lcblas"
But where? I am using the standard installation of packages in R.
install.packages('knncat')
I am not sure of:
- Is it mandatory to install lapack? I do have BLAS + LAPACK.
- How to install a package without using install.packages()?
- which are the choices I have now?
Please install the r-base-dev
package, which will take care of the -dev
packages for LAPACK and BLAS as well.
It was an old version of R. Even when I did upgrade, it does not fixed. I followed this orders: from http://ubuntuforums.org/showthread.php?t=377323
sudo aptitude install r-base r-recommended
In R
install.packages('knncat')
Now it is working!
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